PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG455000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 293aa    MW: 29980.6 Da    PI: 6.5262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG455000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10208249955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Pavir.1NG455000.1.p 208 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 249
                          69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12201256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-12201253No hitNo description
SuperFamilySSF474591.57E-13201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7208249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALVREHGGY AGGFDALGYG HDALLGFDDA AAALFGGGGS HAGAAAAGCE ADGGNVWLGA  60
RASTVLAFDR ATAAAAVVSA EEDEERDAWI DAVDQMSYGD AAAAEARAPT VSVGFDAATG  120
CFTLTERAAS SGGAGRTFGL LFPTTAAAAA ASPERAAPVR ASQKRTYVGV ESPAAVSPKK  180
HCGAGRKATS KAKSAPTVPT KDPQSLAAKN RRERISERLR TLQELVPNGT KVDLVTMLEK  240
AISYVKFLQL QVKVLATDEF WPAQGGKAPE ISQVREALDA ILSSASQRGQ LS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-109AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660552.11e-136PREDICTED: uncharacterized protein LOC101767899
SwissprotQ9C7078e-56BH083_ARATH; Transcription factor bHLH83
TrEMBLK3YZ671e-138K3YZ67_SETIT; Uncharacterized protein
STRINGSi019575m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-54ROOT HAIR DEFECTIVE6